Class: EmpiricalFinding

this category is currently considered broad enough to tag empirical lab measurements and other computational attributes taken as 'empirical traits' with some statistical score, for example, a p value in acquired associations.

URI: base:EmpiricalFinding

classDiagram class EmpiricalFinding ObservableFeature <|-- EmpiricalFinding EmpiricalFinding : category EmpiricalFinding : description EmpiricalFinding : has_attribute EmpiricalFinding : id EmpiricalFinding : in_taxon EmpiricalFinding : iri EmpiricalFinding : name EmpiricalFinding : provided_by EmpiricalFinding : type EmpiricalFinding : xref

Inheritance

Entity
- NamedThing
  - ComputationalEntity [ ThingWithTaxon]
    - FaultOrObservableFeature
      - ObservableFeature
        
        EmpiricalFinding

Slots

Name	Cardinality and Range	Description	Inheritance
description	0..1 NarrativeText	a human-readable description of an entity	Entity
in_taxon	0..1 SystemTaxon	connects an entity to its taxonomic classification	ThingWithTaxon
id	1..1 NONE	A unique identifier for an entity	Entity
has_attribute	0..* Attribute	connects any entity to an attribute	Entity
iri	0..1 IriType	An IRI for an entity	Entity
type	0..1 NONE		Entity
xref	0..* xsd:anyURI	Alternate CURIEs for a thing	NamedThing
provided_by	0..* NONE	The value in this node property represents the knowledge provider that create...	NamedThing
category	0..* CategoryType	Name of the high level ontology class in which this entity is categorized	Entity
name	0..1 LabelType	A human-readable name for an attribute or entity	Entity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

LOINC
NCIT
EFO

Schema Source

from schema: https://w3id.org/lmodel/base

Mappings

Mapping Type	Mapped Value
self	base:EmpiricalFinding
native	base:EmpiricalFinding

LinkML Source

Direct

name: empirical finding
id_prefixes:
- LOINC
- NCIT
- EFO
description: this category is currently considered broad enough to tag empirical lab
  measurements and other computational attributes taken as 'empirical traits' with
  some statistical score, for example, a p value in acquired associations.
from_schema: https://w3id.org/lmodel/base
rank: 1000
is_a: observable feature
slot_usage:
  has attribute:
    name: has attribute
    domain_of:
    - entity
    - entity
    - entity
    range: empirical attribute

Induced

name: empirical finding
id_prefixes:
- LOINC
- NCIT
- EFO
description: this category is currently considered broad enough to tag empirical lab
  measurements and other computational attributes taken as 'empirical traits' with
  some statistical score, for example, a p value in acquired associations.
from_schema: https://w3id.org/lmodel/base
rank: 1000
is_a: observable feature
slot_usage:
  has attribute:
    name: has attribute
    domain_of:
    - entity
    - entity
    - entity
    range: empirical attribute
attributes:
  in taxon:
    name: in taxon
    annotations:
      canonical_predicate:
        tag: canonical_predicate
        value: 'True'
    description: connects an entity to its taxonomic classification. Only certain
      kinds of entities can be taxonomically classified; see 'thing with taxon'
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - instance of
    - is system source of subclasses
    - system has class
    - class found in system
    - subclasses has system source
    exact_mappings:
    - RO:0002162
    - WIKIDATA_PROPERTY:P703
    narrow_mappings:
    - RO:0002160
    rank: 1000
    is_a: related to at instance level
    domain: thing with taxon
    multivalued: true
    inherited: true
    alias: in_taxon
    owner: empirical finding
    domain_of:
    - thing with taxon
    range: system taxon
  provided by:
    name: provided by
    description: The value in this node property represents the knowledge provider
      that created or assembled the node and all of its attributes.  Used internally
      to represent how a particular node made its way into a knowledge provider or
      graph.
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - pav:providedBy
    - WIKIDATA:Q68974939
    rank: 1000
    is_a: node property
    domain: named thing
    multivalued: true
    alias: provided_by
    owner: empirical finding
    domain_of:
    - named thing
    range: string
  xref:
    name: xref
    description: Alternate CURIEs for a thing
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - dbxref
    - Dbxref
    - DbXref
    exact_mappings:
    - WIKIDATA:Q1302249
    narrow_mappings:
    - dwc:identificationReferences
    - gr:relatedWebService
    - NCIT:hasDbXref
    rank: 1000
    is_a: node property
    domain: named thing
    multivalued: true
    alias: xref
    owner: empirical finding
    domain_of:
    - named thing
    - publication
    - class
    - subclasses mixin
    range: uriorcurie
  id:
    name: id
    description: A unique identifier for an entity. Must be either a CURIE shorthand
      for a URI or a complete URI
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:identifier
    - EDAM-DATA:0842
    - EFO:id
    - REPR:id
    - schema:identifier
    - SIO:000115
    - sumo:Identifier
    narrow_mappings:
    - dwc:eventID
    - dwc:parentEventID
    - dwc:identificationID
    - dwc:systemID
    - CSO:bicm-id
    - SIO:000672
    - SIO:000674
    - ERO:0000044
    - ERO:0000480
    - NCIT:C94069
    - REPR:doi
    - SIO:000328
    - SIO:000729
    - schema:productID
    - schema:taxID
    - sumo:AccountID
    - sumo:AlphaIDString
    - sumo:AlphaNumericIDString
    - sumo:AgentID
    - sumo:CountryID
    - sumo:CustomerID
    - sumo:currencyCode
    - sumo:DistrictID
    - sumo:EmployeeID
    - sumo:IsoCode
    - sumo:LocalizablePlaceID
    - sumo:userIDString
    - sumo:urlString
    - sumo:UniformResourceLocator
    - WIKIDATA_PROPERTY:P3743
    broad_mappings:
    - CSO:catalogue_identifiers
    - IAO:0000603
    - IAO:0000119
    - sumo:identityElement
    rank: 1000
    identifier: true
    alias: id
    owner: empirical finding
    domain_of:
    - NamedThing
    - ontology class
    - entity
    range: string
    required: true
  iri:
    name: iri
    description: An IRI for an entity. This is determined by the id using expansion
      rules.
    comments:
    - see also https://url.spec.whatwg.org/#goals
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - rr:IRI
    - WIKIDATA_PROPERTY:P854
    - WIKIDATA:Q424583
    - XAPI:IRI
    close_mappings:
    - NCIT:C165071
    - sumo:UniformResourceLocator
    related_mappings:
    - dwc:usewithiri
    narrow_mappings:
    - RO:0002617
    rank: 1000
    alias: iri
    owner: empirical finding
    domain_of:
    - attribute
    - entity
    range: iri type
  category:
    name: category
    description: "Name of the high level ontology class in which this entity is categorized.\
      \ Corresponds to the label for the base entity type class.\n * In a neo4j database\
      \ this MAY correspond to the neo4j label tag.\n * In an RDF database it should\
      \ be a base model class URI.\nThis field is multi-valued. It should include\
      \ values for ancestors of the base class\nIn an RDF database, nodes will typically\
      \ have an rdf:type triples. This can be to the most specific base class, or\
      \ potentially to a class more specific than something in base."
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    is_a: type
    domain: entity
    multivalued: true
    designates_type: true
    alias: category
    owner: empirical finding
    domain_of:
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
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    - entity
    - entity
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    - entity
    - entity
    is_class_field: true
    range: category type
    required: true
    pattern: ^base:\d+$
  type:
    name: type
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:type
    - IAO:0000219
    - NCIT:C25284
    - schema:type
    - SWO:type
    - sumo:Class
    - WIKIDATA:Q21146257
    - WIKIDATA_PROPERTY:P427
    narrow_mappings:
    - CTRL:DataType
    - CTRL:SemanticType
    - dwc:measurementType
    - GR:typeOfGood
    - IAO:0000411
    - sumo:hardwareType
    - WIKIDATA:Q190087
    broad_mappings:
    - SIO:000011
    - RO:0002473
    - IAO:0006011
    rank: 1000
    slot_uri: rdf:type
    alias: type
    owner: empirical finding
    domain_of:
    - entity
    range: string
  name:
    name: name
    description: A human-readable name for an attribute or entity.
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - label
    - display name
    - title
    exact_mappings:
    - CSO:named_entity
    - gr:name
    - OM:name
    - REPR:name
    - schema:name
    - SIO:000116
    - sumo:Name
    - WIKIDATA_PROPERTY:P2561
    close_mappings:
    - IAO:0000111
    - IAO:0000118
    - skos:altLabel
    - sumo:originalTitle
    narrow_mappings:
    - AML:hasAttributeName
    - dct:title
    - NCIT:P386
    - WIKIDATA_PROPERTY:P1476
    - rr:column
    - rr:tableName
    - schema:recordLabel
    broad_mappings:
    - CSO:named_entity
    rank: 1000
    slot_uri: rdfs:label
    alias: name
    owner: empirical finding
    domain_of:
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    range: label type
  description:
    name: description
    description: a human-readable description of an entity
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - definition
    exact_mappings:
    - dct:description
    - IAO:0000115
    - schema:description
    - skos:definitions
    - sumo:NarrativeText
    - WIKIDATA:Q1200750
    close_mappings:
    - sumo:Descriptor
    narrow_mappings:
    - csrc:architecture_description
    - CSO:architecture_description
    - CSO:concept_description
    - CSO:shape_description
    - OM:longcomment
    rank: 1000
    slot_uri: dct:description
    alias: description
    owner: empirical finding
    domain_of:
    - NamedThing
    - entity
    range: narrative text
  has attribute:
    name: has attribute
    description: connects any entity to an attribute
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    domain: entity
    multivalued: true
    alias: has_attribute
    owner: empirical finding
    domain_of:
    - entity
    - entity
    range: empirical attribute