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Class: CommonDataElement

A Common Data Element (CDE) is a standardized, precisely defined question, paired with a set of allowable responses, used systematically across different sites, studies, or clinical trials to ensure consistent data collection. Multiple CDEs (from one or more Collections) can be curated into Forms. (https://cde.nlm.nih.gov/home)

URI: base:CommonDataElement

classDiagram class CommonDataElement InformationContentEntity <|-- CommonDataElement CommonDataElement : category CommonDataElement : creation_date CommonDataElement : description CommonDataElement : format CommonDataElement : has_attribute CommonDataElement : id CommonDataElement : iri CommonDataElement : license CommonDataElement : name CommonDataElement : provided_by CommonDataElement : rights CommonDataElement : type CommonDataElement : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
description 0..1
NarrativeText		 a human-readable description of an entity Entity
license 0..1
NONE		 InformationContentEntity
format 0..1
NONE		 InformationContentEntity
creation_date 0..1
xsd:date		 date on which an entity was created InformationContentEntity
id 1..1
NONE		 A unique identifier for an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity
iri 0..1
IriType		 An IRI for an entity Entity
rights 0..1
NONE		 InformationContentEntity
type 0..1
NONE		 Entity
xref 0..*
xsd:anyURI		 Alternate CURIEs for a thing NamedThing
provided_by 0..*
NONE		 The value in this node property represents the knowledge provider that create... NamedThing
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lmodel/base

Mappings

Mapping Type Mapped Value
self base:CommonDataElement
native base:CommonDataElement
close NCIT:C19984

LinkML Source

Direct

name: common data element
description: A Common Data Element (CDE) is a standardized, precisely defined question,
  paired with a set of allowable responses, used systematically across different sites,
  studies, or clinical trials to ensure consistent data collection. Multiple CDEs
  (from one or more Collections) can be curated into Forms. (https://cde.nlm.nih.gov/home)
from_schema: https://w3id.org/lmodel/base
close_mappings:
- NCIT:C19984
rank: 1000
is_a: information content entity

Induced

name: common data element
description: A Common Data Element (CDE) is a standardized, precisely defined question,
  paired with a set of allowable responses, used systematically across different sites,
  studies, or clinical trials to ensure consistent data collection. Multiple CDEs
  (from one or more Collections) can be curated into Forms. (https://cde.nlm.nih.gov/home)
from_schema: https://w3id.org/lmodel/base
close_mappings:
- NCIT:C19984
rank: 1000
is_a: information content entity
attributes:
  license:
    name: license
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:license
    - gr:License
    - schema:license
    - sumo:License
    narrow_mappings:
    - sumo:LicenseAgreement
    - WIKIDATA_PROPERTY:P275
    - WIKIDATA:Q7603
    - WIKIDATA_PROPERTY:Q334661
    - WIKIDATA_PROPERTY:Q192897
    - WIKIDATA_PROPERTY:Q284742
    - WIKIDATA_PROPERTY:Q13785927
    - WIKIDATA_PROPERTY:Q3238057
    rank: 1000
    is_a: node property
    domain: information content entity
    alias: license
    owner: common data element
    domain_of:
    - information content entity
    range: string
  rights:
    name: rights
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:rights
    - WIKIDATA:Q780687
    narrow_mappings:
    - CSO:access_rights
    - CSO:cyber_rights
    rank: 1000
    is_a: node property
    domain: information content entity
    alias: rights
    owner: common data element
    domain_of:
    - information content entity
    range: string
  format:
    name: format
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:format
    - NCIT:C42761
    - sumo:format
    - SWO:0004002
    narrow_mappings:
    - CSO:storage_formats
    - REPR:ImageFormat
    - schema:fileFormat
    - WIKIDATA_PROPERTY:P2701
    - WIKIDATA:Q935809
    rank: 1000
    is_a: node property
    domain: information content entity
    alias: format
    owner: common data element
    domain_of:
    - information content entity
    range: string
  creation date:
    name: creation date
    description: date on which an entity was created. This can be applied to nodes
      or edges
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - publication date
    exact_mappings:
    - dct:createdOn
    - schema:dateCreated
    - dwc:dateIdentified
    - schema:datePublished
    - sumo:dateEstablished
    - WIKIDATA_PROPERTY:P577
    narrow_mappings:
    - dwc:eventDate
    - dwc:verbatimEventDate
    - dwc:relationshipEstablishedDate
    - WIKIDATA:Q115748455
    broad_mappings:
    - sumo:date
    rank: 1000
    is_a: node property
    domain: named thing
    alias: creation_date
    owner: common data element
    domain_of:
    - information content entity
    range: date
  provided by:
    name: provided by
    description: The value in this node property represents the knowledge provider
      that created or assembled the node and all of its attributes.  Used internally
      to represent how a particular node made its way into a knowledge provider or
      graph.
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - pav:providedBy
    - WIKIDATA:Q68974939
    rank: 1000
    is_a: node property
    domain: named thing
    multivalued: true
    alias: provided_by
    owner: common data element
    domain_of:
    - named thing
    range: string
  xref:
    name: xref
    description: Alternate CURIEs for a thing
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - dbxref
    - Dbxref
    - DbXref
    exact_mappings:
    - WIKIDATA:Q1302249
    narrow_mappings:
    - dwc:identificationReferences
    - gr:relatedWebService
    - NCIT:hasDbXref
    rank: 1000
    is_a: node property
    domain: named thing
    multivalued: true
    alias: xref
    owner: common data element
    domain_of:
    - named thing
    - publication
    - class
    - subclasses mixin
    range: uriorcurie
  id:
    name: id
    description: A unique identifier for an entity. Must be either a CURIE shorthand
      for a URI or a complete URI
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:identifier
    - EDAM-DATA:0842
    - EFO:id
    - REPR:id
    - schema:identifier
    - SIO:000115
    - sumo:Identifier
    narrow_mappings:
    - dwc:eventID
    - dwc:parentEventID
    - dwc:identificationID
    - dwc:systemID
    - CSO:bicm-id
    - SIO:000672
    - SIO:000674
    - ERO:0000044
    - ERO:0000480
    - NCIT:C94069
    - REPR:doi
    - SIO:000328
    - SIO:000729
    - schema:productID
    - schema:taxID
    - sumo:AccountID
    - sumo:AlphaIDString
    - sumo:AlphaNumericIDString
    - sumo:AgentID
    - sumo:CountryID
    - sumo:CustomerID
    - sumo:currencyCode
    - sumo:DistrictID
    - sumo:EmployeeID
    - sumo:IsoCode
    - sumo:LocalizablePlaceID
    - sumo:userIDString
    - sumo:urlString
    - sumo:UniformResourceLocator
    - WIKIDATA_PROPERTY:P3743
    broad_mappings:
    - CSO:catalogue_identifiers
    - IAO:0000603
    - IAO:0000119
    - sumo:identityElement
    rank: 1000
    identifier: true
    alias: id
    owner: common data element
    domain_of:
    - NamedThing
    - ontology class
    - entity
    range: string
    required: true
  iri:
    name: iri
    description: An IRI for an entity. This is determined by the id using expansion
      rules.
    comments:
    - see also https://url.spec.whatwg.org/#goals
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - rr:IRI
    - WIKIDATA_PROPERTY:P854
    - WIKIDATA:Q424583
    - XAPI:IRI
    close_mappings:
    - NCIT:C165071
    - sumo:UniformResourceLocator
    related_mappings:
    - dwc:usewithiri
    narrow_mappings:
    - RO:0002617
    rank: 1000
    alias: iri
    owner: common data element
    domain_of:
    - attribute
    - entity
    range: iri type
  category:
    name: category
    description: "Name of the high level ontology class in which this entity is categorized.\
      \ Corresponds to the label for the base entity type class.\n * In a neo4j database\
      \ this MAY correspond to the neo4j label tag.\n * In an RDF database it should\
      \ be a base model class URI.\nThis field is multi-valued. It should include\
      \ values for ancestors of the base class\nIn an RDF database, nodes will typically\
      \ have an rdf:type triples. This can be to the most specific base class, or\
      \ potentially to a class more specific than something in base."
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    is_a: type
    domain: entity
    multivalued: true
    designates_type: true
    alias: category
    owner: common data element
    domain_of:
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    is_class_field: true
    range: category type
    required: true
    pattern: ^base:\d+$
  type:
    name: type
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:type
    - IAO:0000219
    - NCIT:C25284
    - schema:type
    - SWO:type
    - sumo:Class
    - WIKIDATA:Q21146257
    - WIKIDATA_PROPERTY:P427
    narrow_mappings:
    - CTRL:DataType
    - CTRL:SemanticType
    - dwc:measurementType
    - GR:typeOfGood
    - IAO:0000411
    - sumo:hardwareType
    - WIKIDATA:Q190087
    broad_mappings:
    - SIO:000011
    - RO:0002473
    - IAO:0006011
    rank: 1000
    slot_uri: rdf:type
    alias: type
    owner: common data element
    domain_of:
    - entity
    range: string
  name:
    name: name
    description: A human-readable name for an attribute or entity.
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - label
    - display name
    - title
    exact_mappings:
    - CSO:named_entity
    - gr:name
    - OM:name
    - REPR:name
    - schema:name
    - SIO:000116
    - sumo:Name
    - WIKIDATA_PROPERTY:P2561
    close_mappings:
    - IAO:0000111
    - IAO:0000118
    - skos:altLabel
    - sumo:originalTitle
    narrow_mappings:
    - AML:hasAttributeName
    - dct:title
    - NCIT:P386
    - WIKIDATA_PROPERTY:P1476
    - rr:column
    - rr:tableName
    - schema:recordLabel
    broad_mappings:
    - CSO:named_entity
    rank: 1000
    slot_uri: rdfs:label
    alias: name
    owner: common data element
    domain_of:
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    range: label type
  description:
    name: description
    description: a human-readable description of an entity
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - definition
    exact_mappings:
    - dct:description
    - IAO:0000115
    - schema:description
    - skos:definitions
    - sumo:NarrativeText
    - WIKIDATA:Q1200750
    close_mappings:
    - sumo:Descriptor
    narrow_mappings:
    - csrc:architecture_description
    - CSO:architecture_description
    - CSO:concept_description
    - CSO:shape_description
    - OM:longcomment
    rank: 1000
    slot_uri: dct:description
    alias: description
    owner: common data element
    domain_of:
    - NamedThing
    - entity
    range: narrative text
  has attribute:
    name: has attribute
    description: connects any entity to an attribute
    in_subset:
    - samples
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - AML:hasAttribute
    - CTRL:hasParameter
    - ssn:hasProperty
    - SIO:000008
    close_mappings:
    - sumo:hasVariable
    - sumo:property
    narrow_mappings:
    - AML:hasAttributeName
    - AML:hasDescription
    - AML:hasICID
    - AML:hasName
    - AML:hasProject
    - AML:hasUnit
    - AML:hasSchemaVersion
    - AML:hasVersionSUC
    - AML:hasWriterVersion
    - schema:hasPart
    - CDAO:has_Character
    - CDAO:has_Root
    - CDAO:has_First_Coordinate_Item
    - CDAO:has_Coordinate
    - CDAO:has_Change_Component
    - CDAO:has_Datum
    - CDAO:has_Node
    - CDAO:has_Annotation
    - CDAO:has_Remaining_Coordinate_List
    - CDAO:has_State
    - CDAO:has_Element
    - CTRL:hasApplicationLogic
    - CTRL:hasInput
    - CTRL:hasMedium
    - CTRL:hasOutput
    - CTRL:isConnectedTo
    - CTRL:isSupervisedBy
    - dct:hasPart
    - dct:hasFormat
    - dct:hasVersion
    - EFO:is_executed_in
    - EFO:0006351
    - geolink:hasAuthoritativeDigitalRepository
    - geolink:hasRelatedSample
    - geolink:hasAffiliation
    - geolink:hasAuthor
    - geolink:hasCollector
    - geolink:hasContact
    - geolink:hasContributor
    - geolink:hasCollectionEndDate
    - geolink:hasCollectionStartDate
    - geolink:hasCreator
    - geolink:hasDataset
    - geolink:hasEditor
    - geolink:hasEducator
    - geolink:hasFirstAppearance
    - geolink:hasIdentifierScheme
    - geolink:hasObserver
    - geolink:hasObservationArea
    - geolink:hasOwner
    - geolink:hasParticipant
    - geolink:hasParticipationEndTime
    - geolink:hasParticipationStartTime
    - geolink:hasPart
    - geolink:hasPublicationDate
    - geolink:hasRegistrationDate
    - geolink:hasStartDate
    - geolink:hasRepository
    - geolink:hasRightsHolder
    - geolink:hasScheduler
    - geolink:hasTimeStamp
    - geolink:hasVendor
    - gr:hasBusinessFunction
    - gr:hasBrand
    - gr:hasCurrency
    - gr:hasEligibleQuantity
    - gr:hasGlobalLocationNumber
    - gr:hasInventoryLevel
    - gr:hasManufacturer
    - gr:hasMakeAndModel
    - gr:hasNext
    - gr:hasPrevious
    - gr:hasUnitOfMeasurement
    - gr:hasValue
    - IAO:0000039
    - IAO:0000407
    - LOINC:has_action_guidance
    - LOINC:has_adjustment
    - LOINC:has_aggregation_view
    - LOINC:has_approach_guidance
    - LOINC:has_divisor
    - LOINC:has_exam
    - LOINC:has_method
    - LOINC:has_modality_subtype
    - LOINC:has_object_guidance
    - LOINC:has_scale
    - LOINC:has_suffix
    - LOINC:has_time_aspect
    - LOINC:has_time_modifier
    - LOINC:has_timing_of
    - NCIT:is_qualified_by
    - NCIT:qualifier_applies_to
    - NCIT:has_data_element
    - NCIT:role_has_domain
    - NCIT:role_has_range
    - NCIT:C62618
    - OM:hasPhenomenon
    - RO:0002002
    - RO:0000053
    - RO:0000086
    - RO:0000087
    - RO:0002520
    - RO:0002018
    - RO:0002017
    - RO:0002013
    - RO:0002016
    - RO:0002025
    - RO:0002521
    - RO:0002348
    - RO:0002566
    - RO:0002002
    - RO:0002338
    - RO:0002339
    - RO:0002573
    - RO:0009004
    - SAN:hasActuatingCapability
    - SAN:hasActuatingProperty
    - SAN:hasDateTime
    - SAN:hasEffect
    - SAN:hasWriter
    - SIO:000011
    - SIO:000586
    - SIO:001277
    - SIO:000671
    - SIO:000312
    - SIO:000552
    - SIO:000420
    - SIO:000253
    - SIO:000132
    - SIO:000255
    - SIO:000008
    - SIO:000364
    - SIO:000230
    - SIO:000235
    - SIO:000234
    - SIO:000228
    - SIO:000229
    - SIO:000900
    - SIO:000905
    - SIO:000221
    - SIO:000225
    - SIO:000223
    - SIO:000217
    - SIO:000291
    - SIO:000054
    - SIO:000059
    - SIO:000028
    - SIO:000139
    - SIO:000772
    - SIO:000641
    - SIO:000635
    - SIO:000066
    - SIO:001279
    - SIO:000300
    - SIO:001278
    - SIO:000680
    - SIO:000681
    - SIO:000679
    - SIO:000673
    - SIO:000369
    - SIO:000053
    - SIO:000972
    - SIO:000971
    - SIO:000273
    - SIO:000644
    - SIO:000974
    - SIO:000553
    - SIO:000145
    - SWO:0004000
    - sosa:hasFeatureOfInterest
    - sosa:hasSample
    - ssn:hasSubSystem
    - ssn:isProxyFor
    - ssn-system:hasSystemCapability
    - ssn-system:hasSystemProperty
    - ssn-system:hasOperatingRange
    - ssn-system:hasOperatingProperty
    - ssn-system:hasSurvivalRange
    - ssn-system:hasSurvivalProperty
    - ssn-system:inCondition
    - sumo:hasAcrossVariable
    - sumo:hasAccount
    - sumo:hasAward
    - sumo:hasDependency
    - sumo:hasDimension
    - sumo:hasExpertise
    - sumo:hasGUEState
    - sumo:hasOccupation
    - sumo:hasPurpose
    - sumo:hasPurposeForAgent
    - sumo:hasSkill
    - sumo:hasThroughVariable
    - sumo:hasUniform
    - sumo:hasVariable
    - sumo:holdsRight
    - SWO:9001002
    - SWO:0004001
    - SWO:9000067
    - SWO:0004002
    - SWO:0000087
    - SWO:0000086
    - SWO:0004004
    - SWO:0000741
    - SWO:0004002
    - SWO:3000054
    - SWO:0004000
    rank: 1000
    domain: entity
    multivalued: true
    alias: has_attribute
    owner: common data element
    domain_of:
    - entity
    range: attribute