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Class: BiologicalSex

URI: base:BiologicalSex

classDiagram class BiologicalSex Attribute <|-- BiologicalSex BiologicalSex : category BiologicalSex : description BiologicalSex : has_attribute BiologicalSex : has_attribute_type BiologicalSex : has_qualitative_value BiologicalSex : has_quantitative_value BiologicalSex : id BiologicalSex : iri BiologicalSex : name BiologicalSex : provided_by BiologicalSex : type BiologicalSex : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
description 0..1
NarrativeText		 a human-readable description of an entity Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Attribute, Entity
has_qualitative_value 0..1
NamedThing		 connects an attribute to a value Attribute
id 1..1
NONE		 A unique identifier for an entity OntologyClass, Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity
iri 0..1
IriType		 An IRI for an entity Attribute, Entity
type 0..1
NONE		 Entity
has_quantitative_value 0..*
QuantityValue		 connects an attribute to a value Attribute
xref 0..*
xsd:anyURI		 Alternate CURIEs for a thing NamedThing
provided_by 0..*
NONE		 The value in this node property represents the knowledge provider that create... NamedThing
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
has_attribute_type 1..1
OntologyClass		 connects an attribute to a class that describes it Attribute

Usages

used by used in type used
EntityToObservableFeatureAssociationMixin sex_qualifier range BiologicalSex
ServiceTypeToObservableFeatureAssociation sex_qualifier range BiologicalSex
ExposureEventToObservableFeatureAssociation sex_qualifier range BiologicalSex
FaultToObservableFeatureAssociation sex_qualifier range BiologicalSex
CaseToObservableFeatureAssociation sex_qualifier range BiologicalSex
BehaviorToBehavioralFeatureAssociation sex_qualifier range BiologicalSex
ClassToObservableFeatureAssociation sex_qualifier range BiologicalSex

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/lmodel/base

Mappings

Mapping Type Mapped Value
self base:BiologicalSex
native base:BiologicalSex
exact PATO:0000047

LinkML Source

Direct

name: biological sex
from_schema: https://w3id.org/lmodel/base
exact_mappings:
- PATO:0000047
rank: 1000
is_a: attribute

Induced

name: biological sex
from_schema: https://w3id.org/lmodel/base
exact_mappings:
- PATO:0000047
rank: 1000
is_a: attribute
attributes:
  name:
    name: name
    description: The human-readable 'attribute name' can be set to a string which
      reflects its context of interpretation, e.g. SEPIO evidence/provenance/confidence
      annotation or it can default to the name associated with the 'has attribute
      type' slot ontology term.
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    slot_uri: rdfs:label
    alias: name
    owner: biological sex
    domain_of:
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    range: label type
  has attribute type:
    name: has attribute type
    description: connects an attribute to a class that describes it
    in_subset:
    - samples
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - AML:hasAttributeDataType
    close_mappings:
    - sumo:havePartTypes
    related_mappings:
    - csrc:access_type
    - csrc:Authenticator_Type
    - csrc:Authority_Type
    - csrc:Checklist_Type
    - csrc:Class_of_Service
    - csrc:default_classification
    - csrc:Defect_Type
    - csrc:Key_type
    - csrc:PIV_Key_Type
    - csrc:Content_Type
    - csrc:DNS_Full_Zone_Transfer_Query_Type
    - csrc:information_type
    - csrc:memberType
    - csrc:Resource_Type
    - csrc:Resource_Type
    - dct:isFormatOf
    - dct:isVersionOf
    - NCIT:C115618
    - NCIT:C42854
    - INO:0000154
    - SAN:QuantityKind
    - schema:publicationType
    - schema:Float
    - schema:Integer
    - sumo:RealNumber
    - sumo:AccountSecurityType
    - sumo:cargoType
    - sumo:currencyType
    - sumo:dependencyType
    - sumo:dependentAreaOfType
    - sumo:diskTypeForDrive
    - sumo:economyType
    - sumo:environmentalProblemTypeInArea
    - sumo:equipmentType
    - sumo:exportCommodityType
    - sumo:hardwareType
    - sumo:importCommodityType
    - sumo:industryProductType
    - sumo:legalSystemType
    - sumo:maritimeClaimType
    - sumo:memberType
    - sumo:mimeType
    - sumo:organizationProductType
    - sumo:partTypes
    - sumo:playsRoleInEventOfType
    - sumo:primaryGeopoliticalSubdivisionType
    - sumo:resultType
    - sumo:trafficableForTrafficType
    - sumo:validPaymentType
    - sumo:viewType
    narrow_mappings:
    - AML:hasDataType
    - AML:hasAttributeName
    - AML:hasBaseSystemUnitClass
    - AML:hasInterfaceClass
    - AML:hasRefBaseClassPath
    - AML:hasRefSemAttribute
    - AML:hasRoleClass
    - AML:hasRoleRequirement
    - CDAO:has_Type
    - CTRL:hasDataType
    - CTRL:hasSemanticType
    - dct:isFormatOf
    - dct:isPartOf
    - dct:isVersionOf
    - dct:isVersionOf
    - geolink:hasDocumentType
    - geolink:hasFeatureType
    - geolink:hasGeoFeatureType
    - geolink:hasInstrumentType
    - geolink:hasMaterialType
    - geolink:hasMeasurementType
    - geolink:hasPlatformType
    - geolink:hasRoleType
    - geolink:hasSampleType
    - geolink:isAffiliationOf
    - geolink:isCreatorOf
    - geolink:isFormatOf
    - geolink:isInstrumentTypeOf
    - geolink:isParticipantOf
    - geolink:isPartOf
    - geolink:isPerformerOf
    - geolink:isPlaceTypeOf
    - geolink:isProgramOf
    - geolink:isSubOrganizationOf
    - geolink:isRightsHolderOf
    - LOINC:has_modality_type
    - LOINC:has_view_type
    - sosa:isFeatureOfInterestOf
    - sosa:isResultOf
    - sumo:havePartTypes
    - sumo:ipAddressOf
    rank: 1000
    domain: attribute
    multivalued: false
    alias: has_attribute_type
    owner: biological sex
    domain_of:
    - attribute
    range: ontology class
    required: true
  has quantitative value:
    name: has quantitative value
    description: connects an attribute to a value
    in_subset:
    - samples
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - CTRL:hasQuantity
    - gr:QuantitativeValue
    - OM:hasQuantity
    - qud:quantityValue
    - schema:QuantitativeValue
    - WIKIDATA:Q17627912
    narrow_mappings:
    - gr:QuantitativeValueFloat
    - gr:QuantitativeValueInteger
    - OM:hasBaseQuantity
    - OM:hasDerivedQuantity
    broad_mappings:
    - NCIT:C70589
    rank: 1000
    domain: attribute
    multivalued: true
    alias: has_quantitative_value
    owner: biological sex
    domain_of:
    - attribute
    - control exposure
    range: quantity value
  has qualitative value:
    name: has qualitative value
    description: connects an attribute to a value
    in_subset:
    - samples
    from_schema: https://w3id.org/lmodel/base
    close_mappings:
    - schema:QualitativeValue
    - sumo:greaterThanByQuality
    narrow_mappings:
    - AML:hasAttributeValue
    - IAO:0000221
    - gr:hasMaxValue
    - gr:hasMinValue
    - SIO:000216
    rank: 1000
    domain: attribute
    multivalued: false
    alias: has_qualitative_value
    owner: biological sex
    domain_of:
    - attribute
    range: named thing
  iri:
    name: iri
    description: An IRI for an entity. This is determined by the id using expansion
      rules.
    comments:
    - see also https://url.spec.whatwg.org/#goals
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - rr:IRI
    - WIKIDATA_PROPERTY:P854
    - WIKIDATA:Q424583
    - XAPI:IRI
    close_mappings:
    - NCIT:C165071
    - sumo:UniformResourceLocator
    related_mappings:
    - dwc:usewithiri
    narrow_mappings:
    - RO:0002617
    rank: 1000
    alias: iri
    owner: biological sex
    domain_of:
    - attribute
    - entity
    range: iri type
  id:
    name: id
    description: A unique identifier for an entity. Must be either a CURIE shorthand
      for a URI or a complete URI
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:identifier
    - EDAM-DATA:0842
    - EFO:id
    - REPR:id
    - schema:identifier
    - SIO:000115
    - sumo:Identifier
    narrow_mappings:
    - dwc:eventID
    - dwc:parentEventID
    - dwc:identificationID
    - dwc:systemID
    - CSO:bicm-id
    - SIO:000672
    - SIO:000674
    - ERO:0000044
    - ERO:0000480
    - NCIT:C94069
    - REPR:doi
    - SIO:000328
    - SIO:000729
    - schema:productID
    - schema:taxID
    - sumo:AccountID
    - sumo:AlphaIDString
    - sumo:AlphaNumericIDString
    - sumo:AgentID
    - sumo:CountryID
    - sumo:CustomerID
    - sumo:currencyCode
    - sumo:DistrictID
    - sumo:EmployeeID
    - sumo:IsoCode
    - sumo:LocalizablePlaceID
    - sumo:userIDString
    - sumo:urlString
    - sumo:UniformResourceLocator
    - WIKIDATA_PROPERTY:P3743
    broad_mappings:
    - CSO:catalogue_identifiers
    - IAO:0000603
    - IAO:0000119
    - sumo:identityElement
    rank: 1000
    identifier: true
    alias: id
    owner: biological sex
    domain_of:
    - NamedThing
    - ontology class
    - entity
    range: string
    required: true
  provided by:
    name: provided by
    description: The value in this node property represents the knowledge provider
      that created or assembled the node and all of its attributes.  Used internally
      to represent how a particular node made its way into a knowledge provider or
      graph.
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - pav:providedBy
    - WIKIDATA:Q68974939
    rank: 1000
    is_a: node property
    domain: named thing
    multivalued: true
    alias: provided_by
    owner: biological sex
    domain_of:
    - named thing
    range: string
  xref:
    name: xref
    description: Alternate CURIEs for a thing
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - dbxref
    - Dbxref
    - DbXref
    exact_mappings:
    - WIKIDATA:Q1302249
    narrow_mappings:
    - dwc:identificationReferences
    - gr:relatedWebService
    - NCIT:hasDbXref
    rank: 1000
    is_a: node property
    domain: named thing
    multivalued: true
    alias: xref
    owner: biological sex
    domain_of:
    - named thing
    - publication
    - class
    - subclasses mixin
    range: uriorcurie
  category:
    name: category
    description: "Name of the high level ontology class in which this entity is categorized.\
      \ Corresponds to the label for the base entity type class.\n * In a neo4j database\
      \ this MAY correspond to the neo4j label tag.\n * In an RDF database it should\
      \ be a base model class URI.\nThis field is multi-valued. It should include\
      \ values for ancestors of the base class\nIn an RDF database, nodes will typically\
      \ have an rdf:type triples. This can be to the most specific base class, or\
      \ potentially to a class more specific than something in base."
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    is_a: type
    domain: entity
    multivalued: true
    designates_type: true
    alias: category
    owner: biological sex
    domain_of:
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    is_class_field: true
    range: category type
    required: true
    pattern: ^base:\d+$
  type:
    name: type
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:type
    - IAO:0000219
    - NCIT:C25284
    - schema:type
    - SWO:type
    - sumo:Class
    - WIKIDATA:Q21146257
    - WIKIDATA_PROPERTY:P427
    narrow_mappings:
    - CTRL:DataType
    - CTRL:SemanticType
    - dwc:measurementType
    - GR:typeOfGood
    - IAO:0000411
    - sumo:hardwareType
    - WIKIDATA:Q190087
    broad_mappings:
    - SIO:000011
    - RO:0002473
    - IAO:0006011
    rank: 1000
    slot_uri: rdf:type
    alias: type
    owner: biological sex
    domain_of:
    - entity
    range: string
  description:
    name: description
    description: a human-readable description of an entity
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - definition
    exact_mappings:
    - dct:description
    - IAO:0000115
    - schema:description
    - skos:definitions
    - sumo:NarrativeText
    - WIKIDATA:Q1200750
    close_mappings:
    - sumo:Descriptor
    narrow_mappings:
    - csrc:architecture_description
    - CSO:architecture_description
    - CSO:concept_description
    - CSO:shape_description
    - OM:longcomment
    rank: 1000
    slot_uri: dct:description
    alias: description
    owner: biological sex
    domain_of:
    - NamedThing
    - entity
    range: narrative text
  has attribute:
    name: has attribute
    description: connects any entity to an attribute
    in_subset:
    - samples
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - AML:hasAttribute
    - CTRL:hasParameter
    - ssn:hasProperty
    - SIO:000008
    close_mappings:
    - sumo:hasVariable
    - sumo:property
    narrow_mappings:
    - AML:hasAttributeName
    - AML:hasDescription
    - AML:hasICID
    - AML:hasName
    - AML:hasProject
    - AML:hasUnit
    - AML:hasSchemaVersion
    - AML:hasVersionSUC
    - AML:hasWriterVersion
    - schema:hasPart
    - CDAO:has_Character
    - CDAO:has_Root
    - CDAO:has_First_Coordinate_Item
    - CDAO:has_Coordinate
    - CDAO:has_Change_Component
    - CDAO:has_Datum
    - CDAO:has_Node
    - CDAO:has_Annotation
    - CDAO:has_Remaining_Coordinate_List
    - CDAO:has_State
    - CDAO:has_Element
    - CTRL:hasApplicationLogic
    - CTRL:hasInput
    - CTRL:hasMedium
    - CTRL:hasOutput
    - CTRL:isConnectedTo
    - CTRL:isSupervisedBy
    - dct:hasPart
    - dct:hasFormat
    - dct:hasVersion
    - EFO:is_executed_in
    - EFO:0006351
    - geolink:hasAuthoritativeDigitalRepository
    - geolink:hasRelatedSample
    - geolink:hasAffiliation
    - geolink:hasAuthor
    - geolink:hasCollector
    - geolink:hasContact
    - geolink:hasContributor
    - geolink:hasCollectionEndDate
    - geolink:hasCollectionStartDate
    - geolink:hasCreator
    - geolink:hasDataset
    - geolink:hasEditor
    - geolink:hasEducator
    - geolink:hasFirstAppearance
    - geolink:hasIdentifierScheme
    - geolink:hasObserver
    - geolink:hasObservationArea
    - geolink:hasOwner
    - geolink:hasParticipant
    - geolink:hasParticipationEndTime
    - geolink:hasParticipationStartTime
    - geolink:hasPart
    - geolink:hasPublicationDate
    - geolink:hasRegistrationDate
    - geolink:hasStartDate
    - geolink:hasRepository
    - geolink:hasRightsHolder
    - geolink:hasScheduler
    - geolink:hasTimeStamp
    - geolink:hasVendor
    - gr:hasBusinessFunction
    - gr:hasBrand
    - gr:hasCurrency
    - gr:hasEligibleQuantity
    - gr:hasGlobalLocationNumber
    - gr:hasInventoryLevel
    - gr:hasManufacturer
    - gr:hasMakeAndModel
    - gr:hasNext
    - gr:hasPrevious
    - gr:hasUnitOfMeasurement
    - gr:hasValue
    - IAO:0000039
    - IAO:0000407
    - LOINC:has_action_guidance
    - LOINC:has_adjustment
    - LOINC:has_aggregation_view
    - LOINC:has_approach_guidance
    - LOINC:has_divisor
    - LOINC:has_exam
    - LOINC:has_method
    - LOINC:has_modality_subtype
    - LOINC:has_object_guidance
    - LOINC:has_scale
    - LOINC:has_suffix
    - LOINC:has_time_aspect
    - LOINC:has_time_modifier
    - LOINC:has_timing_of
    - NCIT:is_qualified_by
    - NCIT:qualifier_applies_to
    - NCIT:has_data_element
    - NCIT:role_has_domain
    - NCIT:role_has_range
    - NCIT:C62618
    - OM:hasPhenomenon
    - RO:0002002
    - RO:0000053
    - RO:0000086
    - RO:0000087
    - RO:0002520
    - RO:0002018
    - RO:0002017
    - RO:0002013
    - RO:0002016
    - RO:0002025
    - RO:0002521
    - RO:0002348
    - RO:0002566
    - RO:0002002
    - RO:0002338
    - RO:0002339
    - RO:0002573
    - RO:0009004
    - SAN:hasActuatingCapability
    - SAN:hasActuatingProperty
    - SAN:hasDateTime
    - SAN:hasEffect
    - SAN:hasWriter
    - SIO:000011
    - SIO:000586
    - SIO:001277
    - SIO:000671
    - SIO:000312
    - SIO:000552
    - SIO:000420
    - SIO:000253
    - SIO:000132
    - SIO:000255
    - SIO:000008
    - SIO:000364
    - SIO:000230
    - SIO:000235
    - SIO:000234
    - SIO:000228
    - SIO:000229
    - SIO:000900
    - SIO:000905
    - SIO:000221
    - SIO:000225
    - SIO:000223
    - SIO:000217
    - SIO:000291
    - SIO:000054
    - SIO:000059
    - SIO:000028
    - SIO:000139
    - SIO:000772
    - SIO:000641
    - SIO:000635
    - SIO:000066
    - SIO:001279
    - SIO:000300
    - SIO:001278
    - SIO:000680
    - SIO:000681
    - SIO:000679
    - SIO:000673
    - SIO:000369
    - SIO:000053
    - SIO:000972
    - SIO:000971
    - SIO:000273
    - SIO:000644
    - SIO:000974
    - SIO:000553
    - SIO:000145
    - SWO:0004000
    - sosa:hasFeatureOfInterest
    - sosa:hasSample
    - ssn:hasSubSystem
    - ssn:isProxyFor
    - ssn-system:hasSystemCapability
    - ssn-system:hasSystemProperty
    - ssn-system:hasOperatingRange
    - ssn-system:hasOperatingProperty
    - ssn-system:hasSurvivalRange
    - ssn-system:hasSurvivalProperty
    - ssn-system:inCondition
    - sumo:hasAcrossVariable
    - sumo:hasAccount
    - sumo:hasAward
    - sumo:hasDependency
    - sumo:hasDimension
    - sumo:hasExpertise
    - sumo:hasGUEState
    - sumo:hasOccupation
    - sumo:hasPurpose
    - sumo:hasPurposeForAgent
    - sumo:hasSkill
    - sumo:hasThroughVariable
    - sumo:hasUniform
    - sumo:hasVariable
    - sumo:holdsRight
    - SWO:9001002
    - SWO:0004001
    - SWO:9000067
    - SWO:0004002
    - SWO:0000087
    - SWO:0000086
    - SWO:0004004
    - SWO:0000741
    - SWO:0004002
    - SWO:3000054
    - SWO:0004000
    rank: 1000
    domain: entity
    multivalued: true
    alias: has_attribute
    owner: biological sex
    domain_of:
    - entity
    range: attribute