Skip to content

Class: Article

URI: base:Article

classDiagram class Article Publication <|-- Article Article : authors Article : category Article : creation_date Article : description Article : format Article : has_attribute Article : id Article : iri Article : iso_abbreviation Article : issue Article : keywords Article : lcsh_terms Article : license Article : name Article : pages Article : provided_by Article : published_in Article : rights Article : summary Article : type Article : volume Article : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
published_in 0..1
xsd:anyURI		 CURIE identifier of a broader publication context within which the publicatio... direct
iso_abbreviation 0..1
NONE		 Standard abbreviation for periodicals in the International Organization for S... direct
volume 0..1
NONE		 volume of a book or music release in a collection/series or a published colle... direct
issue 0..1
NONE		 issue of a newspaper, a scientific journal or magazine for reference purpose direct
license 0..1
NONE		 InformationContentEntity
format 0..1
NONE		 InformationContentEntity
summary 0..1
NONE		 executive summary of a publication Publication
id 1..1
NONE		 A unique identifier for an entity Entity
type 0..1
NONE		 Entity
rights 0..1
NONE		 InformationContentEntity
keywords 0..*
NONE		 keywords tagging a publication Publication
xref 0..*
xsd:anyURI		 Alternate CURIEs for a thing NamedThing, Publication
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
lcsh_terms 0..*
xsd:anyURI		 Library of Congress Subject Headings (LCSH) terms tagging a publication Publication
pages 0..*
NONE		 page number of source referenced for statement or publication Publication
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
creation_date 0..1
xsd:date		 date on which an entity was created InformationContentEntity
iri 0..1
IriType		 An IRI for an entity Entity
provided_by 0..*
NONE		 The value in this node property represents the knowledge provider that create... NamedThing
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
authors 0..*
NONE		 connects an publication to the list of authors who contributed to the publica... Publication

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • PMID

Schema Source

  • from schema: https://w3id.org/lmodel/base

Mappings

Mapping Type Mapped Value
self base:Article
native base:Article

LinkML Source

Direct

name: article
id_prefixes:
- PMID
in_subset:
- model_system_database
from_schema: https://w3id.org/lmodel/base
rank: 1000
is_a: publication
slots:
- published in
- iso abbreviation
- volume
- issue
slot_usage:
  published in:
    name: published in
    description: The enclosing parent serial containing the article should have industry-standard
      identifier from ISSN.
    domain_of:
    - book chapter
    - article
    - book chapter
    - article
    required: true
  iso abbreviation:
    name: iso abbreviation
    description: Optional value, if used locally as a convenience, is set to the iso
      abbreviation of the 'published in' parent.
    domain_of:
    - serial
    - article
    - serial
    - article

Induced

name: article
id_prefixes:
- PMID
in_subset:
- model_system_database
from_schema: https://w3id.org/lmodel/base
rank: 1000
is_a: publication
slot_usage:
  published in:
    name: published in
    description: The enclosing parent serial containing the article should have industry-standard
      identifier from ISSN.
    domain_of:
    - book chapter
    - article
    - book chapter
    - article
    required: true
  iso abbreviation:
    name: iso abbreviation
    description: Optional value, if used locally as a convenience, is set to the iso
      abbreviation of the 'published in' parent.
    domain_of:
    - serial
    - article
    - serial
    - article
attributes:
  published in:
    name: published in
    description: The enclosing parent serial containing the article should have industry-standard
      identifier from ISSN.
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    is_a: node property
    domain: publication
    alias: published_in
    owner: article
    domain_of:
    - book chapter
    - article
    - book chapter
    - article
    range: uriorcurie
    required: true
  iso abbreviation:
    name: iso abbreviation
    description: Optional value, if used locally as a convenience, is set to the iso
      abbreviation of the 'published in' parent.
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    is_a: node property
    domain: publication
    alias: iso_abbreviation
    owner: article
    domain_of:
    - serial
    - article
    - serial
    - article
    range: string
  volume:
    name: volume
    description: volume of a book or music release in a collection/series or a published
      collection of journal issues in a serial publication
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - schema:PublicationVolume
    - WIKIDATA_PROPERTY:P478
    rank: 1000
    is_a: node property
    domain: publication
    alias: volume
    owner: article
    domain_of:
    - book chapter
    - serial
    - article
    range: string
  issue:
    name: issue
    description: issue of a newspaper, a scientific journal or magazine for reference
      purpose
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - schema:PublicationIssue
    - WIKIDATA_PROPERTY:P433
    rank: 1000
    is_a: node property
    domain: publication
    alias: issue
    owner: article
    domain_of:
    - serial
    - article
    range: string
  authors:
    name: authors
    description: connects an publication to the list of authors who contributed to
      the publication. This property should be a comma-delimited list of author names.
      It is recommended that an author's name be formatted as "surname, firstname
      initial.".  Note that this property is a node annotation voicing the citation
      list of authorship which might typically otherwise be more completely documented
      in base:PublicationToProviderAssociation defined edges which point to full details
      about an author and possibly, some qualifiers which clarify the specific status
      of a given author in the publication.
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    is_a: node property
    singular_name: author
    domain: publication
    multivalued: true
    alias: authors
    owner: article
    domain_of:
    - publication
    range: string
  pages:
    name: pages
    description: When a 2-tuple of page numbers are provided, they represent the start
      and end page of the publication within its parent publication context. For books,
      this may be set to the total number of pages of the book.
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    is_a: node property
    domain: publication
    multivalued: true
    alias: pages
    owner: article
    domain_of:
    - publication
    - publication
    - publication
    - publication
    - publication
    - publication
    - publication
    - publication
    - publication
    - publication
    - publication
    - publication
    - publication
    range: string
  summary:
    name: summary
    description: executive  summary of a publication
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - abstract
    exact_mappings:
    - dct:abstract
    - sumo:Summary
    - WIKIDATA:Q333291
    rank: 1000
    is_a: node property
    domain: publication
    alias: summary
    owner: article
    domain_of:
    - publication
    range: string
  keywords:
    name: keywords
    description: keywords tagging a publication
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - schema:keywords
    close_mappings:
    - csrc:keyword
    - sumo:keyName
    - WIKIDATA:Q1072684
    rank: 1000
    is_a: node property
    domain: publication
    multivalued: true
    alias: keywords
    owner: article
    domain_of:
    - publication
    range: string
  lcsh terms:
    name: lcsh terms
    description: Library of Congress Subject Headings (LCSH) terms tagging a publication
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    is_a: node property
    values_from:
    - LCSH
    domain: publication
    multivalued: true
    alias: lcsh_terms
    owner: article
    domain_of:
    - publication
    range: uriorcurie
  xref:
    name: xref
    description: Alternate CURIEs for a thing
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - dbxref
    - Dbxref
    - DbXref
    exact_mappings:
    - WIKIDATA:Q1302249
    narrow_mappings:
    - dwc:identificationReferences
    - gr:relatedWebService
    - NCIT:hasDbXref
    rank: 1000
    is_a: node property
    domain: named thing
    multivalued: true
    alias: xref
    owner: article
    domain_of:
    - named thing
    - publication
    - class
    - subclasses mixin
    range: uriorcurie
  license:
    name: license
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:license
    - gr:License
    - schema:license
    - sumo:License
    narrow_mappings:
    - sumo:LicenseAgreement
    - WIKIDATA_PROPERTY:P275
    - WIKIDATA:Q7603
    - WIKIDATA_PROPERTY:Q334661
    - WIKIDATA_PROPERTY:Q192897
    - WIKIDATA_PROPERTY:Q284742
    - WIKIDATA_PROPERTY:Q13785927
    - WIKIDATA_PROPERTY:Q3238057
    rank: 1000
    is_a: node property
    domain: information content entity
    alias: license
    owner: article
    domain_of:
    - information content entity
    range: string
  rights:
    name: rights
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:rights
    - WIKIDATA:Q780687
    narrow_mappings:
    - CSO:access_rights
    - CSO:cyber_rights
    rank: 1000
    is_a: node property
    domain: information content entity
    alias: rights
    owner: article
    domain_of:
    - information content entity
    range: string
  format:
    name: format
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - dct:format
    - NCIT:C42761
    - sumo:format
    - SWO:0004002
    narrow_mappings:
    - CSO:storage_formats
    - REPR:ImageFormat
    - schema:fileFormat
    - WIKIDATA_PROPERTY:P2701
    - WIKIDATA:Q935809
    rank: 1000
    is_a: node property
    domain: information content entity
    alias: format
    owner: article
    domain_of:
    - information content entity
    range: string
  creation date:
    name: creation date
    description: date on which an entity was created. This can be applied to nodes
      or edges
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - publication date
    exact_mappings:
    - dct:createdOn
    - schema:dateCreated
    - dwc:dateIdentified
    - schema:datePublished
    - sumo:dateEstablished
    - WIKIDATA_PROPERTY:P577
    narrow_mappings:
    - dwc:eventDate
    - dwc:verbatimEventDate
    - dwc:relationshipEstablishedDate
    - WIKIDATA:Q115748455
    broad_mappings:
    - sumo:date
    rank: 1000
    is_a: node property
    domain: named thing
    alias: creation_date
    owner: article
    domain_of:
    - information content entity
    range: date
  provided by:
    name: provided by
    description: The value in this node property represents the knowledge provider
      that created or assembled the node and all of its attributes.  Used internally
      to represent how a particular node made its way into a knowledge provider or
      graph.
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - pav:providedBy
    - WIKIDATA:Q68974939
    rank: 1000
    is_a: node property
    domain: named thing
    multivalued: true
    alias: provided_by
    owner: article
    domain_of:
    - named thing
    range: string
  id:
    name: id
    description: Different kinds of publication subtypes will have different preferred
      identifiers (curies when feasible). Precedence of identifiers for scientific
      articles is as follows PMID if available; DOI if not; actual alternate CURIE
      otherwise. Enclosing publications (i.e. referenced by 'published in' node property)
      such as books and journals, should have industry-standard identifier such as
      from ISBN and ISSN.
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    identifier: true
    alias: id
    owner: article
    domain_of:
    - NamedThing
    - ontology class
    - entity
    - NamedThing
    - ontology class
    - entity
    - NamedThing
    - ontology class
    - entity
    - NamedThing
    - ontology class
    - entity
    - NamedThing
    - ontology class
    - entity
    - NamedThing
    - ontology class
    - entity
    - NamedThing
    - ontology class
    - entity
    - NamedThing
    - ontology class
    - entity
    range: string
    required: true
  iri:
    name: iri
    description: An IRI for an entity. This is determined by the id using expansion
      rules.
    comments:
    - see also https://url.spec.whatwg.org/#goals
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - rr:IRI
    - WIKIDATA_PROPERTY:P854
    - WIKIDATA:Q424583
    - XAPI:IRI
    close_mappings:
    - NCIT:C165071
    - sumo:UniformResourceLocator
    related_mappings:
    - dwc:usewithiri
    narrow_mappings:
    - RO:0002617
    rank: 1000
    alias: iri
    owner: article
    domain_of:
    - attribute
    - entity
    range: iri type
  category:
    name: category
    description: "Name of the high level ontology class in which this entity is categorized.\
      \ Corresponds to the label for the base entity type class.\n * In a neo4j database\
      \ this MAY correspond to the neo4j label tag.\n * In an RDF database it should\
      \ be a base model class URI.\nThis field is multi-valued. It should include\
      \ values for ancestors of the base class\nIn an RDF database, nodes will typically\
      \ have an rdf:type triples. This can be to the most specific base class, or\
      \ potentially to a class more specific than something in base."
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    is_a: type
    domain: entity
    multivalued: true
    designates_type: true
    alias: category
    owner: article
    domain_of:
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    is_class_field: true
    range: category type
    required: true
    pattern: ^base:\d+$
  type:
    name: type
    description: Ontology term for publication type may be drawn from Dublin Core
      types (https://www.dublincore.org/specifications/dublin-core/dcmi-type-vocabulary/),
      the Confederation of Open Access Repositories (COAR) Controlled Vocabulary for
      Resource Type Genres (http://vocabularies.coar-repositories.org/documentation/resource_types/),
      Wikidata (https://www.wikidata.org/wiki/Wikidata:Publication_types), or equivalent
      publication type ontology. When a given publication type ontology term is used
      within a given knowledge graph, then the CURIE identified term must be documented
      in the graph as a concept node of base:category base:OntologyClass.
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    values_from:
    - dctypes
    - LCSH
    - COAR_RESOURCE
    - WIKIDATA
    slot_uri: dct:type
    alias: type
    owner: article
    domain_of:
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    - entity
    range: string
    required: true
  name:
    name: name
    description: the 'title' of the publication is generally recorded in the 'name'
      property (inherited from NamedThing). The field name 'title' is now also tagged
      as an acceptable alias for the node property 'name' (just in case).
    from_schema: https://w3id.org/lmodel/base
    rank: 1000
    slot_uri: rdfs:label
    alias: name
    owner: article
    domain_of:
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    - NamedThing
    - attribute
    - entity
    - assembly mixin
    range: label type
  description:
    name: description
    description: a human-readable description of an entity
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/lmodel/base
    aliases:
    - definition
    exact_mappings:
    - dct:description
    - IAO:0000115
    - schema:description
    - skos:definitions
    - sumo:NarrativeText
    - WIKIDATA:Q1200750
    close_mappings:
    - sumo:Descriptor
    narrow_mappings:
    - csrc:architecture_description
    - CSO:architecture_description
    - CSO:concept_description
    - CSO:shape_description
    - OM:longcomment
    rank: 1000
    slot_uri: dct:description
    alias: description
    owner: article
    domain_of:
    - NamedThing
    - entity
    range: narrative text
  has attribute:
    name: has attribute
    description: connects any entity to an attribute
    in_subset:
    - samples
    from_schema: https://w3id.org/lmodel/base
    exact_mappings:
    - AML:hasAttribute
    - CTRL:hasParameter
    - ssn:hasProperty
    - SIO:000008
    close_mappings:
    - sumo:hasVariable
    - sumo:property
    narrow_mappings:
    - AML:hasAttributeName
    - AML:hasDescription
    - AML:hasICID
    - AML:hasName
    - AML:hasProject
    - AML:hasUnit
    - AML:hasSchemaVersion
    - AML:hasVersionSUC
    - AML:hasWriterVersion
    - schema:hasPart
    - CDAO:has_Character
    - CDAO:has_Root
    - CDAO:has_First_Coordinate_Item
    - CDAO:has_Coordinate
    - CDAO:has_Change_Component
    - CDAO:has_Datum
    - CDAO:has_Node
    - CDAO:has_Annotation
    - CDAO:has_Remaining_Coordinate_List
    - CDAO:has_State
    - CDAO:has_Element
    - CTRL:hasApplicationLogic
    - CTRL:hasInput
    - CTRL:hasMedium
    - CTRL:hasOutput
    - CTRL:isConnectedTo
    - CTRL:isSupervisedBy
    - dct:hasPart
    - dct:hasFormat
    - dct:hasVersion
    - EFO:is_executed_in
    - EFO:0006351
    - geolink:hasAuthoritativeDigitalRepository
    - geolink:hasRelatedSample
    - geolink:hasAffiliation
    - geolink:hasAuthor
    - geolink:hasCollector
    - geolink:hasContact
    - geolink:hasContributor
    - geolink:hasCollectionEndDate
    - geolink:hasCollectionStartDate
    - geolink:hasCreator
    - geolink:hasDataset
    - geolink:hasEditor
    - geolink:hasEducator
    - geolink:hasFirstAppearance
    - geolink:hasIdentifierScheme
    - geolink:hasObserver
    - geolink:hasObservationArea
    - geolink:hasOwner
    - geolink:hasParticipant
    - geolink:hasParticipationEndTime
    - geolink:hasParticipationStartTime
    - geolink:hasPart
    - geolink:hasPublicationDate
    - geolink:hasRegistrationDate
    - geolink:hasStartDate
    - geolink:hasRepository
    - geolink:hasRightsHolder
    - geolink:hasScheduler
    - geolink:hasTimeStamp
    - geolink:hasVendor
    - gr:hasBusinessFunction
    - gr:hasBrand
    - gr:hasCurrency
    - gr:hasEligibleQuantity
    - gr:hasGlobalLocationNumber
    - gr:hasInventoryLevel
    - gr:hasManufacturer
    - gr:hasMakeAndModel
    - gr:hasNext
    - gr:hasPrevious
    - gr:hasUnitOfMeasurement
    - gr:hasValue
    - IAO:0000039
    - IAO:0000407
    - LOINC:has_action_guidance
    - LOINC:has_adjustment
    - LOINC:has_aggregation_view
    - LOINC:has_approach_guidance
    - LOINC:has_divisor
    - LOINC:has_exam
    - LOINC:has_method
    - LOINC:has_modality_subtype
    - LOINC:has_object_guidance
    - LOINC:has_scale
    - LOINC:has_suffix
    - LOINC:has_time_aspect
    - LOINC:has_time_modifier
    - LOINC:has_timing_of
    - NCIT:is_qualified_by
    - NCIT:qualifier_applies_to
    - NCIT:has_data_element
    - NCIT:role_has_domain
    - NCIT:role_has_range
    - NCIT:C62618
    - OM:hasPhenomenon
    - RO:0002002
    - RO:0000053
    - RO:0000086
    - RO:0000087
    - RO:0002520
    - RO:0002018
    - RO:0002017
    - RO:0002013
    - RO:0002016
    - RO:0002025
    - RO:0002521
    - RO:0002348
    - RO:0002566
    - RO:0002002
    - RO:0002338
    - RO:0002339
    - RO:0002573
    - RO:0009004
    - SAN:hasActuatingCapability
    - SAN:hasActuatingProperty
    - SAN:hasDateTime
    - SAN:hasEffect
    - SAN:hasWriter
    - SIO:000011
    - SIO:000586
    - SIO:001277
    - SIO:000671
    - SIO:000312
    - SIO:000552
    - SIO:000420
    - SIO:000253
    - SIO:000132
    - SIO:000255
    - SIO:000008
    - SIO:000364
    - SIO:000230
    - SIO:000235
    - SIO:000234
    - SIO:000228
    - SIO:000229
    - SIO:000900
    - SIO:000905
    - SIO:000221
    - SIO:000225
    - SIO:000223
    - SIO:000217
    - SIO:000291
    - SIO:000054
    - SIO:000059
    - SIO:000028
    - SIO:000139
    - SIO:000772
    - SIO:000641
    - SIO:000635
    - SIO:000066
    - SIO:001279
    - SIO:000300
    - SIO:001278
    - SIO:000680
    - SIO:000681
    - SIO:000679
    - SIO:000673
    - SIO:000369
    - SIO:000053
    - SIO:000972
    - SIO:000971
    - SIO:000273
    - SIO:000644
    - SIO:000974
    - SIO:000553
    - SIO:000145
    - SWO:0004000
    - sosa:hasFeatureOfInterest
    - sosa:hasSample
    - ssn:hasSubSystem
    - ssn:isProxyFor
    - ssn-system:hasSystemCapability
    - ssn-system:hasSystemProperty
    - ssn-system:hasOperatingRange
    - ssn-system:hasOperatingProperty
    - ssn-system:hasSurvivalRange
    - ssn-system:hasSurvivalProperty
    - ssn-system:inCondition
    - sumo:hasAcrossVariable
    - sumo:hasAccount
    - sumo:hasAward
    - sumo:hasDependency
    - sumo:hasDimension
    - sumo:hasExpertise
    - sumo:hasGUEState
    - sumo:hasOccupation
    - sumo:hasPurpose
    - sumo:hasPurposeForAgent
    - sumo:hasSkill
    - sumo:hasThroughVariable
    - sumo:hasUniform
    - sumo:hasVariable
    - sumo:holdsRight
    - SWO:9001002
    - SWO:0004001
    - SWO:9000067
    - SWO:0004002
    - SWO:0000087
    - SWO:0000086
    - SWO:0004004
    - SWO:0000741
    - SWO:0004002
    - SWO:3000054
    - SWO:0004000
    rank: 1000
    domain: entity
    multivalued: true
    alias: has_attribute
    owner: article
    domain_of:
    - entity
    range: attribute